Detecting Selection In Genes
  1. Detecting selection on specific branches
A tutorial using PAML
by Maria Anisimova and Jūlija Pečerska
Data
  • lysozymeSmall.phy
  • lysozymeSmall.newick
Output from CodeML v4.10.0
  • lysozymeSmall_freeratios.txt
  • lysozymeSmall_tworatios.txt
  • lysozymeSmall_threeratios.txt
Control files for CodeML v4.10.0
  • codeml_freeratios.ctl
  • codeml_tworatios.ctl
  • codeml_threeratios.ctl
Labelled tree files
  • lysozymeSmall_colobines.newick
  • lysozymeSmall_colobines_hominoids.newick

  • about
  • license