Detecting Selection In Genes
  1. One Ratio Codon Model
A tutorial using PAML
by Maria Anisimova and Jūlija Pečerska
Data
  • HIVenvSweden.phy
  • HIVenvSweden.trees
Example output
  • HIVenvSweden_M0_fixedbranches.txt
  • HIVenvSweden_M0_MLbranches.txt
  • HIVenvSweden_M0_randominitialbranches.txt
Example control files
  • codeml_m0_fixedbranches.ctl
  • codeml_m0_MLbranches.ctl
  • codeml_m0_randominitialbranches.ctl

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