Index

B

build_mutation_matrix() (in module str_mut_signatures)

C

compute_pca() (in module str_mut_signatures)

E

exposures (str_mut_signatures.NMFResult attribute), [1]

F

filter_mutation_matrix() (in module str_mut_signatures)

G

groups (str_mut_signatures.NMFResult attribute), [1]

L

load_nmf_result() (in module str_mut_signatures)

M

model_params (str_mut_signatures.NMFResult attribute), [1]

module str_mut_signatures

N

NMFResult (class in str_mut_signatures)

P

parse_vcf_files() (in module str_mut_signatures) plot_exposures() (in module str_mut_signatures) plot_pca_samples() (in module str_mut_signatures)

plot_signatures() (in module str_mut_signatures) process_vcf_to_rows() (in module str_mut_signatures) project_onto_signatures() (in module str_mut_signatures)

R

run_nmf() (in module str_mut_signatures)

S

save_counts_matrix() (in module str_mut_signatures) save_nmf_result() (in module str_mut_signatures)

signatures (str_mut_signatures.NMFResult attribute), [1] str_mut_signatures module