Compilation on a local environment

The user shoud have reading/writing rights on the system folders (i.e. /usr/local, /usr/local/include).

Compiling and installing the dependencies

cmake The version 3.16.3 is supported.

Wget https://cmake.org/files/v3.16/cmake-3.16.3.tar.gz
tar zxvf cmake-3.16.3.tar.gz
cd cmake-3.16.3
./bootstrap --prefix=${SharedLibraryPath}
make -j$(nproc)
make install
export PATH=$SharedLibraryPath/bin:$PATH

bpp-core http://biopp.univ-montp2.fr/

#!bash
git clone https://github.com/BioPP/bpp-core
cd bpp-core
git checkout tags/v2.4.1 -b v241
mkdir build
cd build
cmake ..
make install

bpp-seq http://biopp.univ-montp2.fr/

#!bash
git clone https://github.com/BioPP/bpp-seq
cd bpp-seq
git checkout tags/v2.4.1 -b v241
mkdir build
cd build
cmake ..
make install

bpp-phyl http://biopp.univ-montp2.fr/

#!bash
git clone https://github.com/BioPP/bpp-phyl
cd bpp-phyl
git checkout tags/v2.4.1 -b v241
mkdir build
cd build
cmake  ..
make install

boost - C++ Libraries http://www.boost.org/

#!bash
wget https://boostorg.jfrog.io/artifactory/main/release/1.79.0/source/boost_1_79_0.tar.gz
tar xvf boost_1_79_0.tar.gz
cd boost_1_79_0
./bootstrap.sh --prefix=/usr/
./b2 
./b2 install 

glog - Google Logging Library https://github.com/google/glog/

#!bash
git clone -b v0.5.0 https://github.com/google/glog
cd glog
cmake -H. -Bbuild -G "Unix Makefiles"
cmake --build build --target install

gtest - Google Test Library https://github.com/google/googletest/

#!bash
git clone https://github.com/google/googletest.git -b release-1.11.0
cd googletest        # Main directory of the cloned repository.
mkdir build          # Create a directory to hold the build output.
cd build
cmake ..             # Generate native build scripts for GoogleTest.

---

Compiling ARPIP

Dynamic linking

#!bash
git clone https://github.com/acg-team/bpp-arpip/
cd bpp-arpip
cmake --target ARPIP -- -DCMAKE_BUILD_TYPE=Release CMakeLists.txt
make

Static linking

#!bash
git clone https://github.com/acg-team/bpp-arpip/
cd bpp-arpip
cmake --target ARPIP -- -DCMAKE_BUILD_TYPE=Release-static CMakeLists.txt
make