oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
                                  ---  PhyML 3.3.20220408  ---                                             
                              http://www.atgc-montpellier.fr/phyml                                          
                             Copyright CNRS - Universite Montpellier                                 
 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

. Sequence filename: 			primates-nt.phy
. Data set: 				#1
. Initial tree: 			user tree (/Users/pece/Repositories/Selection-in-Genes-Course/tutorials/model-selection/data/primates-nt.newick)
. Model of nucleotides substitution: 	JC69
. Number of taxa: 			20
. Log-likelihood: 			-6311.41686
. Unconstrained log-likelihood: 	-5060.29926
. Composite log-likelihood: 		-41672.00850
. Parsimony: 				739
. Tree size: 				0.52918
. Discrete gamma model: 		Yes
  - Number of classes: 			1
  - Gamma shape parameter: 		1.000
  - Relative rate in class 1: 		1.00000 [freq=1.000000] 		
. Proportion of invariant: 		0.486
. Nucleotides frequencies:
  - f(A)=  0.25000
  - f(C)=  0.25000
  - f(G)=  0.25000
  - f(T)=  0.25000

. Run ID:				JC+I
. Random seed:				1652891136
. Subtree patterns aliasing:		no
. Version:				3.3.20220408
. Time used:				0h0m0s (0 seconds)

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
 Suggested citations:
 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
 Systematic Biology. 2010. 59(3):307-321.

 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo